SymbC1.scaffold143.2 (143.2)


Aliases : 143.2

Description : Topoisomerase I C-terminal domain; DNA topoisomerase I, DNA binding, eukaryotic-type; DNA topoisomerase I, catalytic core, eukaryotic-type [Interproscan].


Gene families : OG_01_0002413 (OrthoFinder) Phylogenetic Tree(s): OG0002413_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold143.2
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Cre03.g178600 30787789, TOP1 Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.02 OrthoFinder
Dusal.0007s00039.1 33201185 DNA topoisomerase I, catalytic core, eukaryotic-type;... 0.02 OrthoFinder
Transcript_contig_56295 56295 DNA topoisomerase I, catalytic core, eukaryotic-type;... 0.01 OrthoFinder
Vocar.0015s0343.1 32898937 DNA topoisomerase I, DNA binding, eukaryotic-type; DNA... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499802.1_8755 KAA8499802 DNA topoisomerase 1 beta 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR025834 TopoI_C_dom 568 636
IPR013500 TopoI_cat_euk 306 534
IPR008336 TopoI_DNA-bd_euk 91 301
No external refs found!