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  5. SymbC1.scaffold13180.3

SymbC1.scaffold13180.3 (13180.3)


Aliases : 13180.3

Description : Domain of unknown function DUF1549; Protein of unknown function DUF1501; Cytochrome C, Planctomycete-type; Integral membrane protein TerC [Interproscan].


Gene families : OG_01_0000096 (OrthoFinder) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold13180.3
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2037 1.2037 Protein of unknown function DUF1501; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold1.2194 1.2194 Domain of unknown function DUF1553; Protein of unknown... 0.03 OrthoFinder
SymbC1.scaffold1.2384 1.2384 Protein of unknown function DUF1501; Transposase... 0.06 OrthoFinder
SymbC1.scaffold1.456 1.456 Protein of unknown function DUF1501; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold14729.2 14729.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold18.235 18.235 Domain of unknown function DUF1549; Protein of unknown... 0.04 OrthoFinder
SymbC1.scaffold2.1175 2.1175 Alpha/beta hydrolase fold-3; Protein of unknown function... 0.06 OrthoFinder
SymbC1.scaffold21255.1 21255.1 Domain of unknown function DUF1549; Cytochrome C,... 0.03 OrthoFinder
SymbC1.scaffold21560.1 21560.1 Domain of unknown function DUF1549; Cytochrome C,... 0.04 OrthoFinder
SymbC1.scaffold22185.2 22185.2 Protein of unknown function DUF1501 [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold22336.1 22336.1 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold22759.1 22759.1 Domain of unknown function DUF1549; Protein of unknown... 0.03 OrthoFinder
SymbC1.scaffold27044.1 27044.1 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold27890.1 27890.1 Domain of unknown function DUF1553 [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold29887.1 29887.1 Domain of unknown function DUF1553 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold30332.1 30332.1 Protein of unknown function DUF1501 [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold37281.1 37281.1 Domain of unknown function DUF1549; Cytochrome C,... 0.03 OrthoFinder
SymbC1.scaffold38781.1 38781.1 Protein of unknown function DUF1501 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold9.269 9.269 Protein of unknown function DUF1501; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold9.414 9.414 Protein of unknown function DUF1501; Alpha/beta... 0.04 OrthoFinder
SymbC1.scaffold9.473 9.473 Protein of unknown function DUF1501; Domain of unknown... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IEP Enrichment
MF GO:0003978 UDP-glucose 4-epimerase activity IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0008987 quinolinate synthetase A activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011444 DUF1549 415 616
IPR011429 Cyt_c_Planctomycete-type 293 349
IPR010869 DUF1501 812 1009
IPR005496 Integral_membrane_TerC 10 224
No external refs found!