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  5. SymbC1.scaffold1307.2

SymbC1.scaffold1307.2 (1307.2)


Aliases : 1307.2

Description : Carbonic anhydrase; Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1307.2
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1030.5 1030.5 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold301.14 301.14 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold5722.2 5722.2 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold7055.1 7055.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold9110.1 9110.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001765 Carbonic_anhydrase 425 495
IPR001765 Carbonic_anhydrase 278 338
IPR001584 Integrase_cat-core 63 168
No external refs found!