SymbC1.scaffold124.6 (124.6)

Aliases : 124.6

Description : Integrase, catalytic core [Interproscan].

Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold124.6
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold1030.5	1030.5	Zinc finger, CCHC-type; Reverse transcriptase,...	0.03	OrthoFinder
SymbC1.scaffold1771.4	1771.4	Zinc finger, CCHC-type [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold1947.9	1947.9	Hypothetical protein	0.03	OrthoFinder
SymbC1.scaffold2374.4	2374.4	Hypothetical protein	0.02	OrthoFinder
SymbC1.scaffold277.5	277.5	Zinc finger, CCHC-type [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold280.3	280.3	Reverse transcriptase, RNA-dependent DNA polymerase...	0.02	OrthoFinder
SymbC1.scaffold301.14	301.14	Hypothetical protein	0.03	OrthoFinder
SymbC1.scaffold3612.1	3612.1	Zinc finger, CCHC-type [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold3876.2	3876.2	Zinc finger, CCHC-type [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold550.3	550.3	Zinc finger, CCHC-type [Interproscan].	0.03	OrthoFinder
SymbC1.scaffold6253.2	6253.2	Zinc finger, CCHC-type [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold721.4	721.4	Hypothetical protein	0.02	OrthoFinder
SymbC1.scaffold7247.3	7247.3	Zinc finger, CCHC-type [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold7700.2	7700.2	Hypothetical protein	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004127	cytidylate kinase activity	IEP	Enrichment
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Enrichment
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Enrichment
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	773	880

External Links

No external refs found!