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  5. Cpa|evm.model.tig00000037.5

Cpa|evm.model.tig00000037.5 (tig00000037_g10072.t1)


Aliases : tig00000037_g10072.t1

Description : 40S ribosomal protein S25-4 OS=Arabidopsis thaliana


Gene families : OG_01_0003067 (OrthoFinder) Phylogenetic Tree(s): OG0003067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000037.5
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre08.g382500 30773860, RPS25 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder
Cz13g18280.t1 No alias Ribosomal protein S25 [Interproscan]. 0.08 OrthoFinder
Dusal.0757s00001.1 33202066 Ribosomal protein S25 [Interproscan]. 0.04 OrthoFinder
EOD07030 No alias Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
EOD36091 No alias Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
OT_12G01700.1 No alias Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
PTI_11G01840.1 No alias Ribosomal protein S25 [Interproscan]. 0.07 OrthoFinder
Sro1033_g233710.1 Contig1396.g12845 40S ribosomal protein S25 0.14 OrthoFinder
TP14G02860.1 No alias Ribosomal protein S25 [Interproscan]. 0.14 OrthoFinder
Vocar.0042s0061.1 32892074 Ribosomal protein S25 [Interproscan]. 0.1 OrthoFinder
XM_002503070.1 MICPUN_82663, 82663 Ribosomal protein S25 [Interproscan]. 0.09 OrthoFinder
XM_003061087.1 MicpuC2_28202, 28202 Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01006863.1_cds_GFH32610.1_27087 HaLaN_31855, GFH32610 Ribosomal protein S25 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20673.1_5214 PRW20673 40S ribosomal S25-3 0.07 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491905.1_4913 KAA8491905 40S ribosomal protein S25-4 0.12 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 14 63
No external refs found!