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  5. SymbC1.scaffold12258.1

SymbC1.scaffold12258.1 (12258.1)


Aliases : 12258.1

Description : Proteasome, subunit alpha/beta; Proteasome alpha-subunit, N-terminal domain [Interproscan].


Gene families : OG_01_0003437 (OrthoFinder) Phylogenetic Tree(s): OG0003437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold12258.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre10.g418100 30789792, POA3 Protein degradation.26S proteasome.20S core... 0.01 OrthoFinder
Cz12g21180.t1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
OT_02G00120.1 No alias Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.01 OrthoFinder
PTI_01G02920.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
Sro495_g154380.1 Contig3243.g25618 Proteasome subunit alpha type 0.02 OrthoFinder
TP04G07880.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
XM_002507041.1 MICPUN_113362, 113362 Proteasome_alpha-4 subunit (PAC1) 0.01 OrthoFinder
XM_003056416.1 MicpuC2_37319, 37319 Proteasome alpha-4 subunit (PAC1) 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45558.1_1248 PRW45558 Proteasome subunit alpha type-4 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 29 188
IPR000426 Proteasome_asu_N 5 27
No external refs found!