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  5. SymbC1.scaffold1200.2

SymbC1.scaffold1200.2 (1200.2)


Aliases : 1200.2

Description : Calcineurin-like phosphoesterase domain, ApaH type; Ribonuclease H domain; Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1200.2
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1612.3 1612.3 Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold666.2 666.2 Thioesterase; Alcohol dehydrogenase, C-terminal;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006094 gluconeogenesis IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0019319 hexose biosynthetic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046364 monosaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004843 Calcineurin-like_PHP_ApaH 1776 1940
IPR000477 RT_dom 758 962
IPR002156 RNaseH_domain 1315 1442
No external refs found!