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  5. SymbC1.scaffold113.6

SymbC1.scaffold113.6 (113.6)


Aliases : 113.6

Description : Oxidoreductase, N-terminal; Solute-binding protein family 5 domain; Xylose isomerase-like, TIM barrel domain; Periplasmic binding protein-like domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain [Interproscan].


Gene families : OG_01_0008772 (OrthoFinder) Phylogenetic Tree(s): OG0008772_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold113.6
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.772 1.772 Xylose isomerase-like, TIM barrel domain; AP... 0.02 OrthoFinder
SymbC1.scaffold4.608 4.608 Xylose isomerase-like, TIM barrel domain; AP... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0051287 NAD binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013022 Xyl_isomerase-like_TIM-brl 1006 1176
IPR000683 Gfo/Idh/MocA-like_OxRdtase_N 1 127
IPR006140 D-isomer_DH_NAD-bd 804 970
IPR000914 SBP_5_dom 1354 1765
No external refs found!