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  5. SymbC1.scaffold1118.4

SymbC1.scaffold1118.4 (1118.4)


Aliases : 1118.4

Description : ABC-2 type transporter; ABC transporter-like [Interproscan].


Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1118.4
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.12 tig00000789_g4105.t1 ABC transporter G family member 7 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g11220.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
EOD16849 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
OT_05G03580.1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
PTI_06G00650.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
Vocar.0007s0183.1 32888238 ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.02 OrthoFinder
XM_002504363.1 MICPUN_95143, 95143 ATP-binding cassette superfamily 0.01 OrthoFinder
XM_003063060.1 MicpuC2_52802, 52802 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|BLLF01001823.1_cds_GFH21408.1_15885 HaLaN_18712, GFH21408 ABC transporter domain-containing protein 0.01 OrthoFinder
lcl|BLLF01006566.1_cds_GFH32365.1_26842 HaLaN_31574, GFH32365 ABC transporter-like [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493197.1_9498 KAA8493197 ABC transporter G family member 15 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 365 605
IPR003439 ABC_transporter-like_ATP-bd 35 198
No external refs found!