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  5. Cpa|evm.model.tig00001532.12

Cpa|evm.model.tig00001532.12 (tig00001532_g9278.t1)


Aliases : tig00001532_g9278.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component


Gene families : OG_01_0003467 (OrthoFinder) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001532.12
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494050 30792426, RPL9 Protein biosynthesis.cytosolic ribosome.large subunit... 0.38 OrthoFinder
Cz02g22040.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.13 OrthoFinder
Dusal.0391s00002.1 33187356 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.27 OrthoFinder
EOD38177 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.26 OrthoFinder
OT_04G01760.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.23 OrthoFinder
PTI_04G03310.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.32 OrthoFinder
Sro227_g092220.1 Contig327.g4334 60S ribosomal protein L9 0.43 OrthoFinder
SymbC1.scaffold52.16 52.16 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold8093.1 8093.1 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.08 OrthoFinder
TP02G08750.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.24 OrthoFinder
Vocar.0031s0019.1 32890092 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.08 OrthoFinder
XM_002501436.1 MICPUN_106868, 106868 Ribosomal l9-like protein 0.32 OrthoFinder
XM_003057971.1 MicpuC2_32821, 32821 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.18 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58897.1_6880 PRW58897 60S ribosomal L9 0.22 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492880.1_2616 KAA8492880 60S ribosomal protein L9-2 0.18 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490502.1_4652 KAA8490502 60S ribosomal protein L9-2 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 24 69
IPR020040 Ribosomal_L6_a/b-dom 81 160
No external refs found!