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  5. SymbC1.scaffold109.39

SymbC1.scaffold109.39 (109.39)


Aliases : 109.39

Description : HlyD family secretion protein; SMP-30/Gluconolactonase/LRE-like region; ABC transporter-like; Fumarylacetoacetase-like, C-terminal; MacB-like periplasmic core domain; Fumarylacetoacetase N-terminal domain; ABC transporter permease protein domain [Interproscan].


Gene families : OG_01_0009964 (OrthoFinder) Phylogenetic Tree(s): OG0009964_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold109.39
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold9.147 9.147 Glycosyl hydrolase family 30, beta sandwich domain; ABC... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003978 UDP-glucose 4-epimerase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0008987 quinolinate synthetase A activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR003838 ABC3_permease_dom 1246 1327
IPR003838 ABC3_permease_dom 852 941
IPR025857 MacB_PCD 991 1157
IPR003439 ABC_transporter-like_ATP-bd 360 503
IPR013658 SGL 1732 1987
IPR011234 Fumarylacetoacetase-like_C 79 316
IPR041072 FAA_hydro_N 1 75
No external refs found!