SymbC1.scaffold10397.3 (10397.3)

Aliases : 10397.3

Description : Ribonuclease H domain; Reverse transcriptase domain; Leucine-rich repeat [Interproscan].

Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold10397.3
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method	Actions
SymbC1.scaffold3962.2	3962.2	Ribonuclease H domain [Interproscan].	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005319	lipid transporter activity	IEP	Enrichment
MF	GO:0005548	phospholipid transporter activity	IEP	Enrichment
BP	GO:0006869	lipid transport	IEP	Enrichment
BP	GO:0007009	plasma membrane organization	IEP	Enrichment
BP	GO:0015748	organophosphate ester transport	IEP	Enrichment
BP	GO:0015914	phospholipid transport	IEP	Enrichment
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Enrichment
BP	GO:0017121	plasma membrane phospholipid scrambling	IEP	Enrichment
MF	GO:0017128	phospholipid scramblase activity	IEP	Enrichment
BP	GO:0034204	lipid translocation	IEP	Enrichment
BP	GO:0045332	phospholipid translocation	IEP	Enrichment
BP	GO:0061024	membrane organization	IEP	Enrichment
BP	GO:0097035	regulation of membrane lipid distribution	IEP	Enrichment
MF	GO:0140303	intramembrane lipid transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	1764	1786
IPR002156	RNaseH_domain	1108	1261
IPR001611	Leu-rich_rpt	1596	1655
IPR001611	Leu-rich_rpt	1513	1569
IPR001611	Leu-rich_rpt	1692	1751
IPR000477	RT_dom	552	782

External Links

No external refs found!