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  5. SymbC1.scaffold10348.1

SymbC1.scaffold10348.1 (10348.1)


Aliases : 10348.1

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000232 (OrthoFinder) Phylogenetic Tree(s): OG0000232_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold10348.1
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1120.2 1120.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold15374.1 15374.1 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1606.6 1606.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.06 OrthoFinder
SymbC1.scaffold1910.3 1910.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.05 OrthoFinder
SymbC1.scaffold2314.3 2314.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold2330.3 2330.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold361.3 361.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold383.6 383.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.05 OrthoFinder
SymbC1.scaffold3862.3 3862.3 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold3995.1 3995.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold4353.2 4353.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold5287.1 5287.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold541.2 541.2 Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold6366.1 6366.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold9224.2 9224.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold9962.1 9962.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 285 301
No external refs found!