SymbC1.scaffold1003.5 (1003.5)

Aliases : 1003.5

Description : Pyruvate phosphate dikinase, AMP/ATP-binding; Alpha-amylase, C-terminal beta-sheet; Glycosyl hydrolase, family 13, catalytic domain; Shikimate kinase/gluconokinase; 3-dehydroquinate dehydratase type I; Carbohydrate binding module family 20 [Interproscan].

Gene families : OG_01_0000963 (OrthoFinder) Phylogenetic Tree(s): OG0000963_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold1003.5

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre08.g384750	30773614	Carbohydrate metabolism.starch...	0.01	OrthoFinder
Dusal.0430s00013.1	33200656	Hypothetical protein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEA	Interproscan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004556	alpha-amylase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016160	amylase activity	None	Extended
MF	GO:0016301	kinase activity	IEA	Interproscan
BP	GO:0016310	phosphorylation	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030246	carbohydrate binding	None	Extended
MF	GO:0030247	polysaccharide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:2001070	starch binding	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity	IEP	Enrichment
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002192	PPDK_AMP/ATP-bd	1194	1500
IPR031322	Shikimate/glucono_kinase	1547	1691
IPR006047	Glyco_hydro_13_cat_dom	50	325
IPR002044	CBM_fam20	510	586
IPR012850	A-amylase_bs_C	380	437
IPR001381	DHquinase_I	1725	1942

External Links

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SymbC1.scaffold1003.5 (1003.5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation