SymbC1.scaffold100.4 (100.4)

Aliases : 100.4

Description : Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; CobW/HypB/UreG, nucleotide-binding domain [Interproscan].

Gene families : OG_01_0000111 (OrthoFinder) Phylogenetic Tree(s): OG0000111_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold100.4
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cz03g02060.t1 No alias CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.02 OrthoFinder
OT_13G01460.1 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder
Transcript_contig_3849 3849 CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_90264 90264 CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.01 OrthoFinder
Vocar.0042s0114.1 32892065 WW domain; CobW/HypB/UreG, nucleotide-binding domain;... 0.03 OrthoFinder
lcl|BLLF01000319.1_cds_GFH10484.1_4961 HaLaN_05805, GFH10484 CobW C-terminal domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000344.1_cds_GFH10756.1_5233 HaLaN_06127, GFH10756 CobW C-terminal domain-containing protein 0.03 OrthoFinder
lcl|BLLF01003418.1_cds_GFH27281.1_21758 HaLaN_25577, GFH27281 COBW domain-containing protein 1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 147 336
IPR011629 Cbl_biosynth_CobW-like_C 415 509
No external refs found!