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  5. SymbC1.scaffold1.578

SymbC1.scaffold1.578 (1.578)


Aliases : 1.578

Description : RTX calcium-binding nonapeptide repeat; RapA2, cadherin-like domain; Concanavalin A-like lectin/glucanases superfamily; Bacterial Ig domain [Interproscan].


Gene families : OG_01_0002000 (OrthoFinder) Phylogenetic Tree(s): OG0002000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.578
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2 1.2 RapA2, cadherin-like domain; Bacterial Ig domain; RTX... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR040853 RapA2_cadherin-like 544 613
IPR040853 RapA2_cadherin-like 1015 1059
IPR040853 RapA2_cadherin-like 649 696
IPR001343 Hemolysn_Ca-bd 2215 2250
IPR001343 Hemolysn_Ca-bd 2251 2280
IPR001343 Hemolysn_Ca-bd 2162 2196
IPR001343 Hemolysn_Ca-bd 2132 2160
No external refs found!