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  5. SymbC1.scaffold1.2194

SymbC1.scaffold1.2194 (1.2194)


Aliases : 1.2194

Description : Domain of unknown function DUF1553; Protein of unknown function DUF1501; Concanavalin A-like lectin/glucanases superfamily; Domain of unknown function DUF1549; WD40 repeat; Cytochrome C, Planctomycete-type; Anaphase-promoting complex subunit 4, WD40 domain [Interproscan].


Gene families : OG_01_0000096 (OrthoFinder) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.2194
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold13180.3 13180.3 Domain of unknown function DUF1549; Protein of unknown... 0.03 OrthoFinder
SymbC1.scaffold22185.2 22185.2 Protein of unknown function DUF1501 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold27890.1 27890.1 Domain of unknown function DUF1553 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold9.269 9.269 Protein of unknown function DUF1501; Domain of unknown... 0.02 OrthoFinder
SymbC1.scaffold9.473 9.473 Protein of unknown function DUF1501; Domain of unknown... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
InterPro domains Description Start Stop
IPR011444 DUF1549 1862 2068
IPR011444 DUF1549 838 1021
IPR011429 Cyt_c_Planctomycete-type 50 107
IPR011429 Cyt_c_Planctomycete-type 1752 1813
IPR001680 WD40_repeat 3535 3572
IPR001680 WD40_repeat 3453 3489
IPR001680 WD40_repeat 3413 3446
IPR001680 WD40_repeat 3495 3531
IPR022655 DUF1553 2453 2712
IPR022655 DUF1553 1084 1312
IPR024977 Apc4_WD40_dom 433 498
IPR010869 DUF1501 2783 3195
No external refs found!