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  5. SymbC1.scaffold1.2089

SymbC1.scaffold1.2089 (1.2089)


Aliases : 1.2089

Description : ABC transporter-like; ABC transporter type 1, transmembrane domain MetI-like; HEAT repeats; Cytochrome c-like domain; Amidohydrolase-related [Interproscan].


Gene families : OG_01_0000828 (OrthoFinder) Phylogenetic Tree(s): OG0000828_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.2089
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1282 1.1282 Cytochrome c-like domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1.2001 1.2001 HEAT repeats; SGNH hydrolase-type esterase domain;... 0.02 OrthoFinder
SymbC1.scaffold12625.2 12625.2 Cytochrome c-like domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2.1259 2.1259 HEAT repeats; SGNH hydrolase-type esterase domain; DNA... 0.03 OrthoFinder
SymbC1.scaffold23599.1 23599.1 HEAT repeats [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold25134.1 25134.1 HEAT repeats [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold26607.1 26607.1 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0009055 electron transfer activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR006680 Amidohydro-rel 1081 1305
IPR000515 MetI-like 1330 1469
IPR009056 Cyt_c-like_dom 859 989
IPR003439 ABC_transporter-like_ATP-bd 1513 1662
No external refs found!