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  5. SymbC1.scaffold1.1486

SymbC1.scaffold1.1486 (1.1486)


Aliases : 1.1486

Description : Domain of unknown function DUF1588; Domain of unknown function DUF1587; Domain of unknown function DUF1592; Domain of unknown function DUF1595; Protein of unknown function DUF1552; Domain of unknown function DUF1585; Cytochrome C, Planctomycete-type [Interproscan].


Gene families : OG_01_0000537 (OrthoFinder) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.1486
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1147 1.1147 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold1.1324 1.1324 RNA polymerase sigma-70 region 2; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold1.947 1.947 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold16.276 16.276 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold2.466 2.466 Domain of unknown function DUF1588; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold9.651 9.651 Domain of unknown function DUF1588; Domain of unknown... 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005436 sodium:phosphate symporter activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005985 sucrose metabolic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0015081 sodium ion transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015294 solute:cation symporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0016157 sucrose synthase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
MF GO:0032182 ubiquitin-like protein binding IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0043130 ubiquitin binding IEP Enrichment
BP GO:0044341 sodium-dependent phosphate transport IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
MF GO:0050043 lactate racemase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
InterPro domains Description Start Stop
IPR011429 Cyt_c_Planctomycete-type 32 79
IPR011478 DUF1585 750 805
IPR013042 DUF1592 447 588
IPR011447 DUF1552 833 1149
IPR013039 DUF1588 609 705
IPR013043 DUF1595 379 439
IPR013036 DUF1587 115 179
No external refs found!