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  5. SymbC1.scaffold1.1478

SymbC1.scaffold1.1478 (1.1478)


Aliases : 1.1478

Description : Deoxyxylulose-5-phosphate synthase; EF-hand domain; Protein of unknown function DUF1559; Prokaryotic N-terminal methylation site; Transketolase, C-terminal domain; Transketolase-like, pyrimidine-binding domain [Interproscan].


Gene families : OG_01_0001797 (OrthoFinder) Phylogenetic Tree(s): OG0001797_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.1478
Cluster HCCA: Cluster_53


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEA Interproscan
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005436 sodium:phosphate symporter activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006743 ubiquinone metabolic process IEP Enrichment
BP GO:0006744 ubiquinone biosynthetic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
MF GO:0015081 sodium ion transmembrane transporter activity IEP Enrichment
MF GO:0015293 symporter activity IEP Enrichment
MF GO:0015294 solute:cation symporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
BP GO:0044341 sodium-dependent phosphate transport IEP Enrichment
MF GO:0050043 lactate racemase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:1901661 quinone metabolic process IEP Enrichment
BP GO:1901663 quinone biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005477 Dxylulose-5-P_synthase 5 281
IPR002048 EF_hand_dom 752 765
IPR002048 EF_hand_dom 770 789
IPR033248 Transketolase_C 493 612
IPR005475 Transketolase-like_Pyr-bd 320 479
IPR012902 N_methyl_site 903 925
IPR011453 DUF1559 929 1210
No external refs found!