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  5. SymbC1.scaffold1.1232

SymbC1.scaffold1.1232 (1.1232)


Aliases : 1.1232

Description : Domain of unknown function DUF1588; Domain of unknown function DUF1587; Domain of unknown function DUF1592; Domain of unknown function DUF1595; Protein of unknown function DUF1552; Cytochrome C, Planctomycete-type [Interproscan].


Gene families : OG_01_0000537 (OrthoFinder) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.1232
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2120 1.2120 Domain of unknown function DUF1588; Ankyrin... 0.04 OrthoFinder
SymbC1.scaffold1.947 1.947 Domain of unknown function DUF1588; Domain of unknown... 0.02 OrthoFinder
SymbC1.scaffold2.466 2.466 Domain of unknown function DUF1588; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold2.868 2.868 GGDEF domain; Protein of unknown function DUF1552 [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold24882.1 24882.1 Protein of unknown function DUF1552 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold9.651 9.651 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008855 exodeoxyribonuclease VII activity IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR011429 Cyt_c_Planctomycete-type 52 98
IPR011447 DUF1552 819 1109
IPR013036 DUF1587 136 200
IPR013042 DUF1592 471 598
IPR013043 DUF1595 401 461
IPR013039 DUF1588 617 715
No external refs found!