Cpa|evm.model.tig00001408.15 (tig00001408_g8610.t1)

Aliases : tig00001408_g8610.t1

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec23 component

Gene families : OG_01_0001655 (OrthoFinder) Phylogenetic Tree(s): OG0001655_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00001408.15
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g180850	30786735, SEC23A	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	OrthoFinder
Dusal.0019s00025.1	33192535	Gelsolin-like domain; Zinc finger, Sec23/Sec24-type;...	0.02	OrthoFinder
EOD30731	No alias	Sec23/Sec24 beta-sandwich; Gelsolin-like domain;...	0.06	OrthoFinder
PTI_01G03450.1	No alias	Gelsolin-like domain; Sec23/Sec24, helical domain;...	0.02	OrthoFinder
Sro972_g226640.1	Contig330.g4393	Transport protein SEC23	0.04	OrthoFinder
Transcript_contig_58075	58075	Gelsolin-like domain; Sec23/Sec24 beta-sandwich;...	0.01	OrthoFinder
Transcript_contig_69437	69437	Sec23/Sec24, trunk domain; Zinc finger, Sec23/Sec24-type...	0.01	OrthoFinder
Vocar.0015s0302.1	32898848	Sec23/Sec24, trunk domain; Gelsolin-like domain;...	0.03	OrthoFinder
XM_002505940.1	MICPUN_107228, 107228	Sec23/Sec24, helical domain; Sec23/Sec24, trunk domain;...	0.01	OrthoFinder
lcl\|BLLF01000060.1_cds_GFH06871.1_1348	HaLaN_01583, GFH06871	Protein transport protein SEC23	0.01	OrthoFinder
lcl\|LHPG02000018.1_cds_PRW32992.1_3755	PRW32992	Transport SEC23-like	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Enrichment
MF	GO:0005047	signal recognition particle binding	IEP	Enrichment
MF	GO:0005048	signal sequence binding	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Enrichment
CC	GO:0005956	protein kinase CK2 complex	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006325	chromatin organization	IEP	Enrichment
BP	GO:0006338	chromatin remodeling	IEP	Enrichment
BP	GO:0006353	DNA-templated transcription, termination	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Enrichment
BP	GO:0006605	protein targeting	IEP	Enrichment
BP	GO:0006612	protein targeting to membrane	IEP	Enrichment
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Enrichment
BP	GO:0006658	phosphatidylserine metabolic process	IEP	Enrichment
BP	GO:0006659	phosphatidylserine biosynthetic process	IEP	Enrichment
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Enrichment
BP	GO:0007010	cytoskeleton organization	IEP	Enrichment
BP	GO:0007051	spindle organization	IEP	Enrichment
MF	GO:0008312	7S RNA binding	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0017069	snRNA binding	IEP	Enrichment
MF	GO:0017070	U6 snRNA binding	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
CC	GO:0030126	COPI vesicle coat	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0030623	U5 snRNA binding	IEP	Enrichment
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Enrichment
MF	GO:0031491	nucleosome binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0033218	amide binding	IEP	Enrichment
BP	GO:0033365	protein localization to organelle	IEP	Enrichment
BP	GO:0034613	cellular protein localization	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0042277	peptide binding	IEP	Enrichment
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Enrichment
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
MF	GO:0044877	protein-containing complex binding	IEP	Enrichment
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Enrichment
BP	GO:0045047	protein targeting to ER	IEP	Enrichment
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Enrichment
BP	GO:0046486	glycerolipid metabolic process	IEP	Enrichment
CC	GO:0048500	signal recognition particle	IEP	Enrichment
BP	GO:0051225	spindle assembly	IEP	Enrichment
BP	GO:0051668	localization within membrane	IEP	Enrichment
BP	GO:0070727	cellular macromolecule localization	IEP	Enrichment
BP	GO:0070925	organelle assembly	IEP	Enrichment
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
BP	GO:0072594	establishment of protein localization to organelle	IEP	Enrichment
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0072657	protein localization to membrane	IEP	Enrichment
BP	GO:0090150	establishment of protein localization to membrane	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012990	Sec23_24_beta_S	508	609
IPR006895	Znf_Sec23_Sec24	164	203
IPR006900	Sec23/24_helical_dom	622	700

External Links

No external refs found!

Cpa|evm.model.tig00001408.15 (tig00001408_g8610.t1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation