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  5. Cpa|evm.model.tig00001368.15

Cpa|evm.model.tig00001368.15 (tig00001368_g8414.t1)


Aliases : tig00001368_g8414.t1

Description : ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000221 (OrthoFinder) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001368.15
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cre10.g439000 30790389 Solute transport.primary active transport.ABC... 0.05 OrthoFinder
Cz06g21170.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Dusal.0225s00018.1 33185197 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
PTI_19G02220.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Transcript_contig_54233 54233 ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55223 55223 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58953 58953 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_79199 79199 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1307.1 32885991 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
XM_002509364.1 MICPUN_62845, 62845 ATP-binding cassette superfamily 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39262.1_2734 PRW39262 ABC transporter D family member chloroplastic isoform A 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497602.1_6555 KAA8497602 Putative ABC transporter ATP-binding protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 443 600
IPR011527 ABC1_TM_dom 172 222
No external refs found!