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  5. Cpa|evm.model.tig00001355.5

Cpa|evm.model.tig00001355.5 (tig00001355_g8343.t1)


Aliases : tig00001355_g8343.t1

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm6 component


Gene families : OG_01_0001195 (OrthoFinder) Phylogenetic Tree(s): OG0001195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001355.5
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre03.g151750 30787083 RNA processing.RNA splicing.U6-associated LSm accessory... 0.12 OrthoFinder
Cre05.g241300 30783199 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.07 OrthoFinder
Cz06g33050.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.05 OrthoFinder
Cz16g08090.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD10326 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD35083 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
OT_16G00390.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro2563_g331380.1 Contig869.g9421 Sm-like protein LSm6 0.03 OrthoFinder
Vocar.0003s0369.1 32889312 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Vocar.0019s0166.1 32892861 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
XM_002502692.1 MICPUN_59039, 59039 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
XM_003056637.1 MicpuC2_9282, 9282 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_003060799.1 MicpuC2_19555, 19555 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 12 76
No external refs found!