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  5. Cpa|evm.model.tig00001339.10

Cpa|evm.model.tig00001339.10 (tig00001339_g8266.t1)


Aliases : tig00001339_g8266.t1

Description : Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000024 (OrthoFinder) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001339.10
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Cre13.g586050 30784571 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic... 0.02 OrthoFinder
EOD07250 No alias BTB/POZ domain [Interproscan]. 0.01 OrthoFinder
EOD09135 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD20444 No alias BTB/POZ domain; NHL repeat [Interproscan]. 0.01 OrthoFinder
EOD21144 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD26390 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
Vocar.0001s0022.1 32885064 NHL repeat; Thioredoxin-like fold [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32602.1_3917 PRW32602 NHL repeat-containing 2 isoform C 0.01 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32604.1_3915 PRW32604 NHL repeat-containing 2 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
InterPro domains Description Start Stop
IPR012336 Thioredoxin-like_fold 149 245
IPR001258 NHL_repeat 470 497
IPR001258 NHL_repeat 296 323
No external refs found!