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  5. Cpa|evm.model.tig00000037.39

Cpa|evm.model.tig00000037.39 (tig00000037_g10108.t1)


Aliases : tig00000037_g10108.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23a component


Gene families : OG_01_0004081 (OrthoFinder) Phylogenetic Tree(s): OG0004081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000037.39
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre06.g282500 30779252, RPL23a Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder
Cz15g20240.t1 No alias Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.28 OrthoFinder
Dusal.0705s00006.1 33186300 Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.24 OrthoFinder
OT_08G04160.1 No alias Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.17 OrthoFinder
PTI_08G02770.1 No alias Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.16 OrthoFinder
Sro521_g159410.1 Contig1979.g16931 60S ribosomal protein L23A 0.39 OrthoFinder
TP06G05220.1 No alias Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.27 OrthoFinder
Vocar.0002s0021.1 32890790 Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.19 OrthoFinder
XM_002507915.1 MICPUN_91476, 91476 Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.24 OrthoFinder
XM_003058530.1 MicpuC2_33613, 33613 Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.12 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34016.1_3146 PRW34016 60S ribosomal L23A 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496143.1_2141 KAA8496143 60S ribosomal protein L23a 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 67 127
IPR005633 Ribosomal_L23/L25_N 8 58
No external refs found!