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  5. Cpa|evm.model.tig00001307.15

Cpa|evm.model.tig00001307.15 (tig00001307_g8127.t1)


Aliases : tig00001307_g8127.t1

Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase


Gene families : OG_01_0000505 (OrthoFinder) Phylogenetic Tree(s): OG0000505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001307.15
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Sro127_g060730.1 Contig98.g1160 Probable histone deacetylase 1-B 0.01 OrthoFinder
Sro388_g132310.1 Contig4393.g33005 Probable histone deacetylase 1-B 0.03 OrthoFinder
Transcript_contig_55018 55018 Histone deacetylase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0033s0117.1 32886389 Histone deacetylase domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006353 DNA-templated transcription, termination IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 2 53
No external refs found!