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  5. Cpa|evm.model.tig00001264.28

Cpa|evm.model.tig00001264.28 (tig00001264_g7884.t1)


Aliases : tig00001264_g7884.t1

Description : Protein biosynthesis.translation initiation.mRNA loading.PABP mRNA poly-A-tail binding factor


Gene families : OG_01_0000841 (OrthoFinder) Phylogenetic Tree(s): OG0000841_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001264.28
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
Cre01.g039300 30789032 Protein biosynthesis.translation initiation.mRNA... 0.05 OrthoFinder
SymbC1.scaffold356.1 356.1 Cold-shock protein, DNA-binding; RNA recognition motif... 0.01 OrthoFinder
lcl|BLLF01000087.1_cds_GFH07309.1_1786 HaLaN_02092, GFH07309 Polyadenylate-binding protein 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61133.1_308 PRW61133 Polyadenylate-binding 4 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61251.1_310 PRW61251 Polyadenylate binding 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496213.1_2211 KAA8496213 Embryonic polyadenylate-binding protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005777 peroxisome IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042579 microbody IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002004 PABP_HYD 798 844
IPR019079 Capsule_synth_CapA 7 271
IPR000504 RRM_dom 386 454
IPR000504 RRM_dom 476 538
IPR000504 RRM_dom 567 610
IPR000504 RRM_dom 310 367
No external refs found!