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  5. Cpa|evm.model.tig00001229.23

Cpa|evm.model.tig00001229.23 (tig00001229_g7858.t1)


Aliases : tig00001229_g7858.t1

Description : Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001229.23
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Dusal.0064s00001.1 33190297 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
EOD22905 No alias Vacuolar protein sorting protein 4 [Ensembl]. 0.01 OrthoFinder
TP12G00370.1 No alias ATPase, AAA-type, core; Vps4 oligomerisation,... 0.01 OrthoFinder
Transcript_contig_89153 89153 ATPase, AAA-type, core [Interproscan]. 0.01 OrthoFinder
XM_002505303.1 MICPUN_86677, 86677 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
lcl|BLLF01004789.1_cds_GFH30248.1_24725 HaLaN_29064, GFH30248 AAA domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000124 SAGA complex IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 73 163
No external refs found!