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  5. Cpa|evm.model.tig00001214.13

Cpa|evm.model.tig00001214.13 (tig00001214_g7555.t1)


Aliases : tig00001214_g7555.t1

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).flap structure-specific endonuclease (FEN1)


Gene families : OG_01_0001910 (OrthoFinder) Phylogenetic Tree(s): OG0001910_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001214.13
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Cre03.g145687 30787113 DNA damage response.DNA repair mechanisms.base excision... 0.07 OrthoFinder
Cz02g04010.t1 No alias XPG N-terminal; XPG-I domain [Interproscan]. 0.06 OrthoFinder
EOD20908 No alias XPG-I domain; XPG N-terminal [Interproscan]. 0.05 OrthoFinder
Sro292_g109630.1 Contig484.g6533 Flap endonuclease 1 0.04 OrthoFinder
Vocar.0014s0084.1 32888481 XPG N-terminal; XPG-I domain [Interproscan]. 0.03 OrthoFinder
XM_002501708.1 MICPUN_96332, 96332 Flap endonuclease-1 (FEN1) 0.05 OrthoFinder
XM_003058867.1 MicpuC2_4172, 4172 XPG N-terminal; XPG-I domain [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0031144 proteasome localization IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006085 XPG_DNA_repair_N 1 65
IPR006086 XPG-I_dom 146 232
No external refs found!