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Aliases : tig00001206_g7501.t1
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.BRX1 assembly factor
Gene families : OG_01_0003672 (OrthoFinder) Phylogenetic Tree(s): OG0003672_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00001206.16 | |
| Cluster | HCCA: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre02.g095400 | 30785032 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder | |
| Dusal.0223s00029.1 | 33201368 | Brix domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD09828 | No alias | Brix domain [Interproscan]. | 0.05 | OrthoFinder | |
| OT_03G02680.1 | No alias | Brix domain [Interproscan]. | 0.09 | OrthoFinder | |
| PTI_13G02230.1 | No alias | Brix domain [Interproscan]. | 0.12 | OrthoFinder | |
| Sro144_g066850.1 | Contig3873.g29784 | Ribosome biogenesis protein BRX1 | 0.1 | OrthoFinder | |
| Transcript_contig_58779 | 58779 | Brix domain [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002503542.1 | MICPUN_70696, 70696 | Brix domain [Interproscan]. | 0.07 | OrthoFinder | |
| XM_003055496.1 | MicpuC2_5402, 5402 | Brix domain [Interproscan]. | 0.05 | OrthoFinder | |
| lcl|BLLF01001644.1_cds_GFH20481.1_14958 | HaLaN_17609, GFH20481 | Brix domain-containing protein | 0.06 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007109 | Brix | 31 | 208 |
| No external refs found! |