1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00001164.8

Cpa|evm.model.tig00001164.8 (tig00001164_g7398.t1)


Aliases : tig00001164_g7398.t1

Description : 5-3 exoribonuclease 2 OS=Arabidopsis thaliana


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001164.8
Cluster HCCA: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
Cre16.g679900 30777977, XRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz15g12010.t1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.03 OrthoFinder
Dusal.0097s00006.1 33203701 Putative 5-3 exonuclease; Xrn1, helical domain; 5'-3'... 0.03 OrthoFinder
EOD26127 No alias 5'-3' exoribonuclease 1, SH3-like domain [Interproscan]. 0.03 OrthoFinder
PTI_01G08170.1 No alias 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, helical... 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497424.1_1153 KAA8497424 5'-3' exoribonuclease 1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004859 Put_53exo 59 157
IPR004859 Put_53exo 1 50
No external refs found!