1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00001164.6

Cpa|evm.model.tig00001164.6 (tig00001164_g7396.t1)


Aliases : tig00001164_g7396.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL30 component


Gene families : OG_01_0003786 (OrthoFinder) Phylogenetic Tree(s): OG0003786_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001164.6
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre10.g420750 30790763, RPL30 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder
Dusal.0308s00002.1 33194619 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.07 OrthoFinder
EOD38147 No alias Putative ribosomal protein L30 [Ensembl]. 0.02 OrthoFinder
OT_17G01970.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.05 OrthoFinder
PTI_03G00930.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.14 OrthoFinder
Sro580_g170070.1 Contig2039.g17522 60S ribosomal protein L30 0.15 OrthoFinder
TP08G03670.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.19 OrthoFinder
Vocar.0016s0044.1 32898101 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.1 OrthoFinder
XM_002502647.1 MICPUN_94345, 94345 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.09 OrthoFinder
XM_003064220.1 MicpuC2_49144, 49144 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01002655.1_cds_GFH24873.1_19350 HaLaN_22743, GFH24873 Ribosomal_L7Ae domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20625.1_5215 PRW20625 60S ribosomal L30 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493323.1_9624 KAA8493323 60S ribosomal protein L30 0.13 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 32 128
No external refs found!