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  5. Cpa|evm.model.tig00001155.3

Cpa|evm.model.tig00001155.3 (tig00001155_g7311.t1)


Aliases : tig00001155_g7311.t1

Description : Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000782 (OrthoFinder) Phylogenetic Tree(s): OG0000782_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001155.3
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Cre10.g426350 30789758 Beta-carotene isomerase D27, chloroplastic... 0.02 OrthoFinder
Sro480_g151380.1 Contig2927.g23339 Domain of unknown function DUF4033 [Interproscan]. 0.01 OrthoFinder
TP01G11300.1 No alias Domain of unknown function DUF4033 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56399 56399 Domain of unknown function DUF4033 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_57301 57301 Domain of unknown function DUF4033 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89993 89993 Domain of unknown function DUF4033 [Interproscan]. 0.01 OrthoFinder
Vocar.0004s0130.1 32889404 Domain of unknown function DUF4033 [Interproscan]. 0.02 OrthoFinder
XM_003064354.1 MicpuC2_49228, 49228 Domain of unknown function DUF4033 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR025114 D27-like_C 173 250
No external refs found!