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  5. Cz19g08090.t1

Cz19g08090.t1


Description : Integrase, catalytic core; Reverse transcriptase domain; Integrase zinc-binding domain; Reverse transcriptase, RNase H-like domain [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz19g08090.t1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cz03g14150.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.01 OrthoFinder
Cz03g28140.t1 No alias Reverse transcriptase domain; Integrase zinc-binding... 0.03 OrthoFinder
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.07 OrthoFinder
Cz03g40140.t1 No alias Chromo domain; Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
Cz04g31300.t1 No alias Chromo domain [Interproscan]. 0.01 OrthoFinder
Cz04g31310.t1 No alias Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
Cz05g14160.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.04 OrthoFinder
Cz06g11150.t1 No alias Reverse transcriptase, RNase H-like domain; Integrase... 0.07 OrthoFinder
Cz06g22260.t1 No alias Hypothetical protein 0.01 OrthoFinder
Cz07g15230.t1 No alias Chromo domain [Interproscan]. 0.04 OrthoFinder
Cz09g23160.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.03 OrthoFinder
Cz11g01040.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz15g16050.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.03 OrthoFinder
Cz15g18080.t1 No alias Chromo domain [Interproscan]. 0.04 OrthoFinder
UNPLg00342.t1 No alias Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01001218.1_cds_GFH17889.1_12366 HaLaN_14611, GFH17889 Reverse transcriptase, RNase H-like domain; Reverse... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498172.1_7125 KAA8498172 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500031.1_8984 KAA8500031 Transposon Tf2-6 polyprotein 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494421.1_2951 KAA8494421 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494327.1_4191 KAA8494327 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493427.1_9728 KAA8493427 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492973.1_2709 KAA8492973 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491610.1_5078 KAA8491610 Retrovirus-related Pol polyprotein from transposon 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491611.1_5079 KAA8491611 Retrovirus-related Pol polyprotein from transposon 17.6 0.02 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
InterPro domains Description Start Stop
IPR041373 RT_RNaseH 285 386
IPR041588 Integrase_H2C2 479 533
IPR001584 Integrase_cat-core 552 663
IPR000477 RT_dom 36 196
No external refs found!