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  5. Cz18g11110.t1

Cz18g11110.t1


Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz18g11110.t1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.18 tig00000944_g5940.t1 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g264800 30779004 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.15 OrthoFinder
Cre06.g265400 30779197 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g266750 30778405 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.1 OrthoFinder
Cre06.g273850 30778673, HTB7 Chromatin organisation.histones.H2B-type histone 0.06 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.1 OrthoFinder
Cre06.g275800 30778604 Chromatin organisation.histones.H2B-type histone 0.07 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.15 OrthoFinder
Cre06.g276900 30779728, HTB24 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder
Cre12.g504550 30792324 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.11 OrthoFinder
Cre12.g505600 30792301, HTB17 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.12 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.16 OrthoFinder
Cre13.g590750 30783880, HTB37 Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.1 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.15 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.15 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.15 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.13 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.14 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.07 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.07 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.07 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.07 OrthoFinder
EOD34128 No alias Hypothetical protein [Ensembl]. 0.04 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.07 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
OT_12G00920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.12 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.06 OrthoFinder
Sro1563_g282700.1 Contig1017.g10180 Histone H2B 0.05 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.09 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.1 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0001s0460.1 32886156 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0881.1 32885389 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0392.1 32891126 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0005s0053.1 32884040 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0016s0272.1 32898185 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Vocar.0016s0281.1 32897879 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Vocar.0027s0139.1 32887089 Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
Vocar.0027s0148.1 32887083 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0028s0099.1 32895722 Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
XM_002503927.1 MICPUN_108622, 108622 Histone H2B 0.03 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.07 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.11 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60378.1_4501 PRW60378 Histone H2B 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56968.1_9099 PRW56968 Histone 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57107.1_9026 PRW57107 Histone 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57308.1_9005 PRW57308 Histone 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57429.1_9063 PRW57429 Histone 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33046.1_3813 PRW33046 Histone 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0004725 protein tyrosine phosphatase activity IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006470 protein dephosphorylation IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 101
No external refs found!