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  5. Cz18g04250.t1

Cz18g04250.t1


Description : ABC-transporter extension domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000347 (OrthoFinder) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz18g04250.t1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.83 tig00000194_g14815.t1 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre06.g265100 30779138 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre07.g335400 30774844 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD05643 No alias ABC transporter-like [Interproscan]. 0.02 OrthoFinder
OT_04G00900.1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
PTI_29G00950.1 No alias ABC transporter-like; ABC-transporter extension domain... 0.03 OrthoFinder
Sro1195_g251380.1 Contig4057.g31104 ATP-binding protein ChvD (Fragment) 0.04 OrthoFinder
Sro1_g000580.1 Contig3007.g23973 ATP-binding protein ChvD (Fragment) 0.04 OrthoFinder
SymbC1.scaffold17418.2 17418.2 ABC transporter-like; Signal transduction response... 0.01 OrthoFinder
SymbC1.scaffold540.7 540.7 ABC transporter-like; ABC-transporter extension domain... 0.02 OrthoFinder
TP03G06030.1 No alias ABC transporter-like; ABC-transporter extension domain... 0.03 OrthoFinder
TP04G09160.1 No alias ABC transporter-like; ABC-transporter extension domain... 0.02 OrthoFinder
Vocar.0065s0003.1 32886855 ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
XM_002508755.1 MICPUN_106164, 106164 ATP-binding cassette superfamily 0.02 OrthoFinder
XM_003056771.1 MicpuC2_25670, 25670 ATP-binding cassette superfamily 0.01 OrthoFinder
XM_003058038.1 MicpuC2_32930, 32930 ATP-binding cassette superfamily 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR032781 ABC_tran_Xtn 344 411
IPR003439 ABC_transporter-like_ATP-bd 136 305
IPR003439 ABC_transporter-like_ATP-bd 455 589
No external refs found!