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  5. Cz16g19040.t1

Cz16g19040.t1


Description : Photosystem II PsbO, manganese-stabilising [Interproscan].


Gene families : OG_01_0001803 (OrthoFinder) Phylogenetic Tree(s): OG0001803_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz16g19040.t1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020911.42 tig00020911_g15745.t1 Oxygen-evolving enhancer protein 1, chloroplastic... 0.04 OrthoFinder
Cpa|evm.model.tig00020911.43 tig00020911_g15745.t1 Oxygen-evolving enhancer protein 1, chloroplastic... 0.04 OrthoFinder
Cre09.g396213 30780284, PSBO Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.39 OrthoFinder
Dusal.0128s00011.1 33185282 Photosystem II PsbO, manganese-stabilising [Interproscan]. 0.05 OrthoFinder
OT_14G00180.1 No alias Photosystem II PsbO, manganese-stabilising [Interproscan]. 0.16 OrthoFinder
PTI_08G03550.1 No alias Photosystem II PsbO, manganese-stabilising [Interproscan]. 0.09 OrthoFinder
Sro852_g211010.1 Contig107.g1243 Enhancer protein 1, chloroplastic 0.02 OrthoFinder
Transcript_contig_58678 58678 Photosystem II PsbO, manganese-stabilising [Interproscan]. 0.03 OrthoFinder
Vocar.0009s0198.1 32893184 Photosystem II PsbO, manganese-stabilising [Interproscan]. 0.1 OrthoFinder
XM_002505763.1 MICPUN_92317, 92317 Photosystem II manganese-stabilizing polypeptide (PSBO) 0.09 OrthoFinder
XM_003063805.1 MicpuC2_48994, 48994 Photosystem II manganese-stabilizing polypeptide (PSBO) 0.1 OrthoFinder
lcl|BLLF01004367.1_cds_GFH29477.1_23954 HaLaN_28140, GFH29477 Photosystem II PsbO, manganese-stabilising [Interproscan]. 0.13 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20611.1_5274 PRW20611 33kDa oxygen evolving of photosystem II 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0010207 photosystem II assembly IEA Interproscan
MF GO:0010242 oxygen evolving activity IEA Interproscan
BP GO:0042549 photosystem II stabilization IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0015994 chlorophyll metabolic process IEP Enrichment
BP GO:0015995 chlorophyll biosynthetic process IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
CC GO:0034357 photosynthetic membrane IEP Enrichment
CC GO:0042651 thylakoid membrane IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002628 PSII_MSP 65 297
No external refs found!