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  5. Cz16g13090.t1

Cz16g13090.t1


Description : ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz16g13090.t1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.123 tig00000093_g3553.t1 ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder
Cpa|evm.model.tig00021179.32 tig00021179_g19247.t1 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g488400 30792208 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g541300 30792645 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre16.g650151 30777740 Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase... 0.02 OrthoFinder
Dusal.0318s00001.1 33185642 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56032 56032 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
Transcript_contig_56834 56834 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
Vocar.0004s0337.1 32889894 ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
Vocar.0014s0127.1 32888365 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
Vocar.0041s0001.1 32888711 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.04 OrthoFinder
XM_002500459.1 MICPUN_80010, 80010 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.02 OrthoFinder
lcl|BLLF01000275.1_cds_GFH09933.1_4410 HaLaN_05164, GFH09933 MIT [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 394 426
IPR003959 ATPase_AAA_core 236 366
No external refs found!