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  5. Cz16g11080.t1

Cz16g11080.t1


Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz16g11080.t1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000319.12 tig00000319_g24123.t1 No description available 0.03 OrthoFinder
Cz06g10040.t1 No alias Hypothetical protein 0.02 OrthoFinder
Dusal.0930s00003.1 33193956 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
EOD31022 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
EOD39290 No alias Zinc finger, RING-type [Interproscan]. 0.05 OrthoFinder
PTI_22G01940.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Sro40_g024590.1 Contig335.g4466 RING finger domain protein 0.01 OrthoFinder
Sro65_g036790.1 Contig155.g1749 Protein ligase Arkadia 0.01 OrthoFinder
TP22G02510.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496988.1_717 KAA8496988 E3 ubiquitin-protein ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 561 603
No external refs found!