Cz16g04260.t1

Description : Reverse transcriptase, RNA-dependent DNA polymerase; GAG-pre-integrase domain; gag-polypeptide of LTR copia-type; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz16g04260.t1
Cluster	HCCA: Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0015074	DNA integration	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	386	447
IPR001878	Znf_CCHC	225	242
IPR013103	RVT_2	717	951

External Links

No external refs found!

Cz16g04260.t1

Expression Profile

Co-expression Networks

Functional Annotation