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  5. Cz15g16050.t1

Cz15g16050.t1


Description : Retroviral aspartyl protease; Retrotransposon gag domain; Reverse transcriptase domain; Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz15g16050.t1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Cz03g40130.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.12 OrthoFinder
Cz04g31320.t1 No alias Retroviral aspartyl protease; Reverse transcriptase... 0.09 OrthoFinder
Cz05g14160.t1 No alias Retroviral aspartyl protease; Retrotransposon gag... 0.05 OrthoFinder
Cz15g18080.t1 No alias Chromo domain [Interproscan]. 0.06 OrthoFinder
Cz19g08090.t1 No alias Integrase, catalytic core; Reverse transcriptase domain;... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 503 661
IPR041577 RT_RNaseH_2 726 776
IPR005162 Retrotrans_gag_dom 14 78
No external refs found!