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Description : LSM domain, eukaryotic/archaea-type [Interproscan].
Gene families : OG_01_0005497 (OrthoFinder) Phylogenetic Tree(s): OG0005497_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cz14g22120.t1 | |
| Cluster | HCCA: Cluster_145 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000553.39 | tig00000553_g2111.t1 | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | OrthoFinder | |
| OT_07G03130.1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_03G03020.1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
| Sro181_g079050.1 | Contig4257.g32232 | Sm-like protein LSM5 | 0.03 | OrthoFinder | |
| Vocar.0019s0021.1 | 32892647 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Enrichment |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0004843 | thiol-dependent deubiquitinase | IEP | Enrichment |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Enrichment |
| CC | GO:0005839 | proteasome core complex | IEP | Enrichment |
| BP | GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process | IEP | Enrichment |
| BP | GO:0006508 | proteolysis | IEP | Enrichment |
| MF | GO:0008233 | peptidase activity | IEP | Enrichment |
| MF | GO:0008242 | omega peptidase activity | IEP | Enrichment |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Enrichment |
| BP | GO:0022900 | electron transport chain | IEP | Enrichment |
| BP | GO:0022904 | respiratory electron transport chain | IEP | Enrichment |
| BP | GO:0030030 | cell projection organization | IEP | Enrichment |
| BP | GO:0030031 | cell projection assembly | IEP | Enrichment |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| CC | GO:0034464 | BBSome | IEP | Enrichment |
| BP | GO:0044782 | cilium organization | IEP | Enrichment |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Enrichment |
| MF | GO:0051920 | peroxiredoxin activity | IEP | Enrichment |
| BP | GO:0060271 | cilium assembly | IEP | Enrichment |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Enrichment |
| BP | GO:0070925 | organelle assembly | IEP | Enrichment |
| MF | GO:0101005 | deubiquitinase activity | IEP | Enrichment |
| BP | GO:0120031 | plasma membrane bounded cell projection assembly | IEP | Enrichment |
| BP | GO:0120036 | plasma membrane bounded cell projection organization | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 21 | 88 |
| No external refs found! |