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  5. Cz14g16200.t1

Cz14g16200.t1


Description : SWAP/Surp; RNA polymerase II-binding domain; mRNA splicing factor Cwf21 domain [Interproscan].


Gene families : OG_01_0002691 (OrthoFinder) Phylogenetic Tree(s): OG0002691_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz14g16200.t1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021181.2 tig00021181_g19306.t1 Protein RRC1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre03.g158150 30788125 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cz14g16190.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_89202 89202 SWAP/Surp; RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0019s0079.1 32892630 RNA recognition motif domain; SWAP/Surp [Interproscan]. 0.02 OrthoFinder
XM_002508938.1 MICPUN_63212, 63212 RNA recognition motif domain; SWAP/Surp [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57019.1_8875 PRW57019 U2 snRNP-associated SURP motif-containing-like isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR000061 Surp 142 191
IPR013170 mRNA_splic_Cwf21_dom 680 724
No external refs found!