1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00001095.9

Cpa|evm.model.tig00001095.9 (tig00001095_g7025.t1)


Aliases : tig00001095_g7025.t1

Description : Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001095.9
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Cre09.g407200 30780595 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.02 OrthoFinder
Cre16.g651923 30776797 Secondary metabolism.terpenoids.terpenoid... 0.01 OrthoFinder
Cz14g22040.t1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
Dusal.0195s00005.1 33196565 Amine oxidase [Interproscan]. 0.02 OrthoFinder
EOD14379 No alias NAD(P)-binding Rossmann-like domain [Interproscan]. 0.03 OrthoFinder
EOD16224 No alias Amine oxidase [Interproscan]. 0.01 OrthoFinder
EOD40572 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
PTI_06G02910.1 No alias Amine oxidase [Interproscan]. 0.03 OrthoFinder
Sro1228_g254380.1 Contig2695.g21739 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
Sro1649_g288630.1 Contig3529.g27273 Prolycopene isomerase, chloroplastic 0.03 OrthoFinder
Sro570_g168610.1 Contig131.g1484 Prolycopene isomerase, chloroplastic 0.05 OrthoFinder
Sro94_g048820.1 Contig150.g1672 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
TP03G05800.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
TP15G02230.1 No alias NAD(P)-binding Rossmann-like domain; Amine oxidase... 0.01 OrthoFinder
Transcript_contig_2488 2488 NAD(P)-binding Rossmann-like domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_78738 78738 Hypothetical protein 0.01 OrthoFinder
XM_003063775.1 MicpuC2_42987, 42987 Amine oxidase [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000127.1_cds_GFH07954.1_2431 HaLaN_02839, GFH07954 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
lcl|BLLF01000143.1_cds_GFH08171.1_2648 HaLaN_03092, GFH08171 Putative chloroplast carotenoid isomerase 0.02 OrthoFinder
lcl|BLLF01000143.1_cds_GFH08172.1_2649 HaLaN_03093, GFH08172 Putative chloroplast carotenoid isomerase 0.02 OrthoFinder
lcl|BLLF01000280.1_cds_GFH10007.1_4484 HaLaN_05249, GFH10007 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33144.1_3623 PRW33144 Carotene isomerase 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003953 FAD-binding_2 82 111
No external refs found!