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  5. Cz14g02070.t1

Cz14g02070.t1


Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz14g02070.t1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001030.37 tig00001030_g6476.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre05.g230600 30783444 External stimuli response.light.UV-B light.UVR8 photoreceptor 0.02 OrthoFinder
EOD28341 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
OT_08G02470.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.05 OrthoFinder
OT_16G02830.1 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
PTI_12G00160.1 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
TP03G07260.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_10133 10133 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_387 387 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_003055521.1 MicpuC2_37978, 37978 Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
lcl|BLLF01000950.1_cds_GFH16129.1_10606 HaLaN_12494, GFH16129 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000902 cell morphogenesis IEP Enrichment
MF GO:0000976 transcription cis-regulatory region binding IEP Enrichment
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP Enrichment
MF GO:0001067 transcription regulatory region nucleic acid binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
BP GO:0009653 anatomical structure morphogenesis IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032422 purine-rich negative regulatory element binding IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 33 80
IPR000408 Reg_chr_condens 83 131
IPR000408 Reg_chr_condens 291 329
IPR000408 Reg_chr_condens 240 287
IPR000408 Reg_chr_condens 135 184
IPR000408 Reg_chr_condens 187 235
No external refs found!