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  5. Cz13g15140.t1

Cz13g15140.t1


Description : Ribosomal protein S24e [Interproscan].


Gene families : OG_01_0003099 (OrthoFinder) Phylogenetic Tree(s): OG0003099_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz13g15140.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000361.64 tig00000361_g24416.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder
Cre10.g456200 30790790, RPS24 Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder
Dusal.0101s00022.1 33199178 Ribosomal protein S24e [Interproscan]. 0.17 OrthoFinder
EOD04609 No alias Ribosomal protein S24e [Interproscan]. 0.16 OrthoFinder
EOD07443 No alias Ribosomal protein S24e [Interproscan]. 0.16 OrthoFinder
EOD15137 No alias Ribosomal protein S24e [Interproscan]. 0.16 OrthoFinder
OT_15G02130.1 No alias Ribosomal protein S24e [Interproscan]. 0.05 OrthoFinder
PTI_12G01490.1 No alias Ribosomal protein S24e [Interproscan]. 0.27 OrthoFinder
Sro1425_g271600.1 Contig1471.g13488 40S ribosomal protein S24 0.32 OrthoFinder
TP06G03620.1 No alias Ribosomal protein S24e [Interproscan]. 0.26 OrthoFinder
Vocar.0030s0141.1 32894415 Ribosomal protein S24e [Interproscan]. 0.12 OrthoFinder
XM_002505242.1 MICPUN_92037, 92037 Ribosomal protein S24e [Interproscan]. 0.23 OrthoFinder
XM_003060283.1 MicpuC2_60015, 60015 Ribosomal protein S24e [Interproscan]. 0.13 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57383.1_8825 PRW57383 40S ribosomal S24 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499016.1_7969 KAA8499016 40S ribosomal protein S24-2 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
CC GO:0005761 mitochondrial ribosome IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001976 Ribosomal_S24e 26 104
No external refs found!