Cz13g13220.t1

Description : Ribosomal protein S28e [Interproscan].

Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz13g13220.t1
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g510450	30792329, RPS28	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder
Dusal.0106s00013.1	33193490	Ribosomal protein S28e [Interproscan].	0.02	OrthoFinder
EOD20419	No alias	Ribosomal protein S28e [Interproscan].	0.07	OrthoFinder
EOD23634	No alias	Ribosomal protein S28e [Interproscan].	0.07	OrthoFinder
OT_07G03760.1	No alias	Ribosomal protein S28e [Interproscan].	0.03	OrthoFinder
PTI_26G01600.1	No alias	Ribosomal protein S28e [Interproscan].	0.06	OrthoFinder
Sro2078_g313630.1	Contig3499.g27144	40S ribosomal protein S28	0.08	OrthoFinder
TP24G00120.1	No alias	Ribosomal protein S28e [Interproscan].	0.03	OrthoFinder
Vocar.0016s0208.1	32898111	Ribosomal protein S28e [Interproscan].	0.03	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492075.1_5258	KAA8492075	40S ribosomal protein S28	0.02	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490545.1_5911	KAA8490545	40S ribosomal protein S28	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Enrichment
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Enrichment
BP	GO:0006414	translational elongation	IEP	Enrichment
BP	GO:0006457	protein folding	IEP	Enrichment
BP	GO:0006817	phosphate ion transport	IEP	Enrichment
CC	GO:0031082	BLOC complex	IEP	Enrichment
CC	GO:0031083	BLOC-1 complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	18	79

External Links

No external refs found!

Cz13g13220.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation