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  5. Cpa|evm.model.tig00001086.5

Cpa|evm.model.tig00001086.5 (tig00001086_g6839.t1)


Aliases : tig00001086_g6839.t1

Description : RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase


Gene families : OG_01_0001153 (OrthoFinder) Phylogenetic Tree(s): OG0001153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001086.5
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre12.g486900 30792022 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.02 OrthoFinder
Cz10g20190.t1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
OT_08G01020.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
XM_002503300.1 MICPUN_82497, 82497 TRNA-dihydrouridine synthase 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006665 sphingolipid metabolic process IEP Enrichment
BP GO:0006672 ceramide metabolic process IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 1 224
No external refs found!