Cz12g15200.t1


Description : Exoribonuclease, phosphorolytic domain 2; S1 domain; Polyribonucleotide nucleotidyltransferase, RNA-binding domain; Exoribonuclease, phosphorolytic domain 1; K Homology domain, type 1 [Interproscan].


Gene families : OG_01_0000856 (OrthoFinder) Phylogenetic Tree(s): OG0000856_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz12g15200.t1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Cre04.g214501 30791490 RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder
EOD08148 No alias Polynucleotide phosphorylase/polyadenylase [Ensembl]. 0.02 OrthoFinder
PTI_05G02050.1 No alias Exoribonuclease, phosphorolytic domain 1; S1 domain... 0.02 OrthoFinder
Sro968_g226120.1 Contig1973.g16887 Polyribonucleotide nucleotidyltransferase 0.02 OrthoFinder
TP04G01990.1 No alias Exoribonuclease, phosphorolytic domain 1; S1 domain;... 0.02 OrthoFinder
XM_003062695.1 MicpuC2_52438, 52438 Exoribonuclease, phosphorolytic domain 1; K Homology... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496217.1_2215 KAA8496217 Polyribonucleotide nucleotidyltransferase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000976 transcription cis-regulatory region binding IEP Enrichment
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP Enrichment
MF GO:0001067 transcription regulatory region nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032422 purine-rich negative regulatory element binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 93 222
IPR001247 ExoRNase_PH_dom1 404 542
IPR015848 PNPase_PH_RNA-bd_bac/org-type 320 400
IPR003029 S1_domain 792 853
IPR015847 ExoRNase_PH_dom2 226 288
IPR015847 ExoRNase_PH_dom2 621 691
IPR004088 KH_dom_type_1 719 774
No external refs found!